Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Gm10012-201ENSMUST00000078252 192 ntBASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm11814-201ENSMUST00000119515 929 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm8810-201ENSMUST00000172895 754 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm37922-201ENSMUST00000195596 455 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gm45684-201ENSMUST00000210244 1571 ntBASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx56Q9D0R4 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Gm13123-201ENSMUST00000122173 492 ntBASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Gm8652-201ENSMUST00000181363 964 ntBASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms