Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Gm20445-201ENSMUST00000061905 565 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx28Q9CWT6 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Gm43721-201ENSMUST00000199677 2313 ntBASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Ddx28Q9CWT6 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm15321-201ENSMUST00000121290 288 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm5866-201ENSMUST00000177881 973 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm27437-201ENSMUST00000183429 107 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms