Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ushbp1Q8R370 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.59□□□□□ -0.07
Ushbp1Q8R370 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ushbp1Q8R370 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ushbp1Q8R370 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ushbp1Q8R370 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.58□□□□□ -0.07
Ushbp1Q8R370 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.58□□□□□ -0.07
Ushbp1Q8R370 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ushbp1Q8R370 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ushbp1Q8R370 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Gm14723-201ENSMUST00000118686 215 ntBASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ushbp1Q8R370 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Gm27243-201ENSMUST00000183964 521 ntBASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ushbp1Q8R370 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Gm8810-201ENSMUST00000172895 754 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Gm8598-201ENSMUST00000221184 836 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Gm17383-201ENSMUST00000078739 1041 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Gm12846-201ENSMUST00000120431 1373 ntBASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Ushbp1Q8R370 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms