Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gm8885-201ENSMUST00000189382 598 ntBASIC17.75■□□□□ 0.43
Usp40Q8BWR4 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 AA914427-201ENSMUST00000193194 1166 ntBASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp40Q8BWR4 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Gm9924-202ENSMUST00000192760 2311 ntBASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Gm16570-201ENSMUST00000161951 436 ntBASIC17.74■□□□□ 0.43
Usp40Q8BWR4 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Gm8712-201ENSMUST00000221090 701 ntBASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Usp40Q8BWR4 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Gm15547-201ENSMUST00000122152 333 ntBASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Rn7s1-201ENSMUST00000174924 300 ntBASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Rn7s2-201ENSMUST00000175032 300 ntBASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Gm26461-201ENSMUST00000175064 290 ntBASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp40Q8BWR4 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms