Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm13342-201ENSMUST00000121055 207 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm8738-201ENSMUST00000172606 329 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm37489-201ENSMUST00000191883 159 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm44364-201ENSMUST00000198368 141 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm7046-201ENSMUST00000221351 977 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Ubfd1Q78JW9 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 CT009713.10-201ENSMUST00000225013 1986 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm10434-201ENSMUST00000101158 471 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm12502-201ENSMUST00000120197 444 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm13297-201ENSMUST00000120205 934 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Gm42928-201ENSMUST00000197338 3339 ntBASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ubfd1Q78JW9 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Ubfd1Q78JW9 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.65□□□□□ -0.39
Ubfd1Q78JW9 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Ubfd1Q78JW9 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Ubfd1Q78JW9 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Ubfd1Q78JW9 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.64□□□□□ -0.39
Ubfd1Q78JW9 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Ubfd1Q78JW9 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ubfd1Q78JW9 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Ubfd1Q78JW9 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ubfd1Q78JW9 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms