Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Mir1943-201ENSMUST00000158276 73 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Gm25043-201ENSMUST00000158604 212 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Gm3508-201ENSMUST00000186012 792 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.82□□□□□ -0.52
Usf1Q61069 Gm43830-201ENSMUST00000198760 1067 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.82□□□□□ -0.52
Usf1Q61069 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Gm44100-201ENSMUST00000204329 436 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Gm10109-202ENSMUST00000206890 1211 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.82□□□□□ -0.52
Usf1Q61069 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Usf1Q61069 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
Usf1Q61069 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Usf1Q61069 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Usf1Q61069 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Usf1Q61069 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Usf1Q61069 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.82□□□□□ -0.52
Usf1Q61069 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Usf1Q61069 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Usf1Q61069 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usf1Q61069 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.81□□□□□ -0.52
Usf1Q61069 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Gm37297-201ENSMUST00000192974 2384 ntBASIC11.81□□□□□ -0.52
Usf1Q61069 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Usf1Q61069 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC11.81□□□□□ -0.52
Usf1Q61069 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.81□□□□□ -0.52
Usf1Q61069 AU022133-201ENSMUST00000200601 873 ntBASIC11.81□□□□□ -0.52
Usf1Q61069 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.81□□□□□ -0.52
Usf1Q61069 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.81□□□□□ -0.52
Usf1Q61069 Gm18556-201ENSMUST00000219748 1031 ntBASIC11.81□□□□□ -0.52
Usf1Q61069 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.81□□□□□ -0.52
Usf1Q61069 Gm14267-206ENSMUST00000226870 1209 ntBASIC11.81□□□□□ -0.52
Usf1Q61069 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.81□□□□□ -0.52
Usf1Q61069 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usf1Q61069 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC11.8□□□□□ -0.52
Usf1Q61069 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Usf1Q61069 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms