Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm13611-201ENSMUST00000118269 318 ntBASIC11.11□□□□□ -0.63
Col8a1Q00780 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm4768-201ENSMUST00000206199 686 ntBASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm8337-201ENSMUST00000187358 1938 ntBASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 CT030684.3-201ENSMUST00000227308 2445 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm37411-201ENSMUST00000194180 2282 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm11531-201ENSMUST00000117614 555 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gm8385-201ENSMUST00000058999 643 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Col8a1Q00780 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col8a1Q00780 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC11.1□□□□□ -0.63
Col8a1Q00780 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.09□□□□□ -0.63
Col8a1Q00780 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.09□□□□□ -0.63
Col8a1Q00780 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.09□□□□□ -0.63
Col8a1Q00780 AC140293.1-201ENSMUST00000225626 1247 ntBASIC11.09□□□□□ -0.63
Col8a1Q00780 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 74 ms