Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Msx3P70354 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx3P70354 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Msx3P70354 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Msx3P70354 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Msx3P70354 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Msx3P70354 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.36□□□□□ -0.27
Msx3P70354 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx3P70354 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx3P70354 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx3P70354 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx3P70354 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Msx3P70354 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx3P70354 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC13.36□□□□□ -0.27
Msx3P70354 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.35□□□□□ -0.27
Msx3P70354 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msx3P70354 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Msx3P70354 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Msx3P70354 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.35□□□□□ -0.27
Msx3P70354 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.35□□□□□ -0.27
Msx3P70354 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC13.35□□□□□ -0.27
Msx3P70354 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC13.35□□□□□ -0.27
Msx3P70354 AC159006.1-201ENSMUST00000226396 258 ntBASIC13.35□□□□□ -0.27
Msx3P70354 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Msx3P70354 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.35□□□□□ -0.27
Msx3P70354 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.35□□□□□ -0.27
Msx3P70354 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msx3P70354 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msx3P70354 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx3P70354 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
Msx3P70354 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Gm8213-201ENSMUST00000118191 441 ntBASIC13.34□□□□□ -0.27
Msx3P70354 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.34□□□□□ -0.27
Msx3P70354 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Msx3P70354 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC13.34□□□□□ -0.27
Msx3P70354 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Gm7287-201ENSMUST00000205267 602 ntBASIC13.34□□□□□ -0.27
Msx3P70354 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msx3P70354 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Msx3P70354 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msx3P70354 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msx3P70354 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Msx3P70354 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.34□□□□□ -0.27
Msx3P70354 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Gm9115-201ENSMUST00000120192 1348 ntBASIC13.34□□□□□ -0.27
Msx3P70354 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx3P70354 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx3P70354 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
Msx3P70354 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx3P70354 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Msx3P70354 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
Msx3P70354 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms