Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC16.78■□□□□ 0.28
Col18a1P39061 Gm9116-201ENSMUST00000192400 1018 ntBASIC16.78■□□□□ 0.28
Col18a1P39061 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC16.78■□□□□ 0.28
Col18a1P39061 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC16.78■□□□□ 0.28
Col18a1P39061 Ap3s1-202ENSMUST00000224622 978 ntBASIC16.78■□□□□ 0.28
Col18a1P39061 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Col18a1P39061 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Col18a1P39061 Gm13910-201ENSMUST00000121752 1428 ntBASIC16.77■□□□□ 0.28
Col18a1P39061 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col18a1P39061 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col18a1P39061 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Col18a1P39061 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col18a1P39061 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
Col18a1P39061 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC16.77■□□□□ 0.28
Col18a1P39061 Gm24844-201ENSMUST00000158679 127 ntBASIC16.77■□□□□ 0.28
Col18a1P39061 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col18a1P39061 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC16.77■□□□□ 0.28
Col18a1P39061 Gm43778-201ENSMUST00000199438 199 ntBASIC16.77■□□□□ 0.28
Col18a1P39061 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC16.77■□□□□ 0.28
Col18a1P39061 AC122350.1-201ENSMUST00000228135 533 ntBASIC16.77■□□□□ 0.28
Col18a1P39061 AC136376.2-201ENSMUST00000228819 490 ntBASIC16.77■□□□□ 0.28
Col18a1P39061 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col18a1P39061 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col18a1P39061 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm7537-201ENSMUST00000221660 1414 ntBASIC16.77■□□□□ 0.27
Col18a1P39061 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm14274-201ENSMUST00000117182 615 ntBASIC16.77■□□□□ 0.27
Col18a1P39061 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC16.77■□□□□ 0.27
Col18a1P39061 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm18201-201ENSMUST00000174735 875 ntBASIC16.77■□□□□ 0.27
Col18a1P39061 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm5714-201ENSMUST00000197343 566 ntBASIC16.77■□□□□ 0.27
Col18a1P39061 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm35713-201ENSMUST00000210516 199 ntBASIC16.77■□□□□ 0.27
Col18a1P39061 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col18a1P39061 Gm6903-201ENSMUST00000160509 1366 ntBASIC16.77■□□□□ 0.27
Col18a1P39061 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.76■□□□□ 0.27
Col18a1P39061 Retreg1-206ENSMUST00000228306 1430 ntBASIC16.76■□□□□ 0.27
Col18a1P39061 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC16.76■□□□□ 0.27
Col18a1P39061 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Col18a1P39061 Gm8956-201ENSMUST00000203939 825 ntBASIC16.76■□□□□ 0.27
Col18a1P39061 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC16.76■□□□□ 0.27
Col18a1P39061 Gm7959-201ENSMUST00000221823 1078 ntBASIC16.76■□□□□ 0.27
Col18a1P39061 AC154257.1-202ENSMUST00000224729 843 ntBASIC16.76■□□□□ 0.27
Col18a1P39061 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col18a1P39061 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Col18a1P39061 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC16.75■□□□□ 0.27
Col18a1P39061 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
Col18a1P39061 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC16.75■□□□□ 0.27
Col18a1P39061 Gm5298-201ENSMUST00000201122 892 ntBASIC16.75■□□□□ 0.27
Col18a1P39061 Gm3017-201ENSMUST00000203603 1126 ntBASIC16.75■□□□□ 0.27
Col18a1P39061 Gm18706-201ENSMUST00000210053 1066 ntBASIC16.75■□□□□ 0.27
Col18a1P39061 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col18a1P39061 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC16.75■□□□□ 0.27
Col18a1P39061 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col18a1P39061 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Gm3150-201ENSMUST00000166418 204 ntBASIC16.74■□□□□ 0.27
Col18a1P39061 Gm8815-201ENSMUST00000173809 620 ntBASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms