Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col3a1P08121 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col3a1P08121 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC15.33■□□□□ 0.05
Col3a1P08121 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
Col3a1P08121 Gm25700-201ENSMUST00000177693 110 ntBASIC15.33■□□□□ 0.05
Col3a1P08121 Gm45224-201ENSMUST00000208203 414 ntBASIC15.33■□□□□ 0.05
Col3a1P08121 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC15.33■□□□□ 0.05
Col3a1P08121 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Col3a1P08121 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.05
Col3a1P08121 AC123665.1-201ENSMUST00000228204 438 ntBASIC15.33■□□□□ 0.05
Col3a1P08121 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col3a1P08121 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Gm14028-201ENSMUST00000117434 479 ntBASIC15.33■□□□□ 0.04
Col3a1P08121 Gm23119-201ENSMUST00000158610 140 ntBASIC15.33■□□□□ 0.04
Col3a1P08121 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Col3a1P08121 Ighv5-7-201ENSMUST00000192302 244 ntBASIC15.33■□□□□ 0.04
Col3a1P08121 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Gm19187-201ENSMUST00000206781 892 ntBASIC15.33■□□□□ 0.04
Col3a1P08121 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC15.33■□□□□ 0.04
Col3a1P08121 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC15.33■□□□□ 0.04
Col3a1P08121 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col3a1P08121 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Col3a1P08121 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 AC151895.1-201ENSMUST00000219025 1742 ntBASIC15.32■□□□□ 0.04
Col3a1P08121 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Gm43908-201ENSMUST00000205074 1472 ntBASIC15.32■□□□□ 0.04
Col3a1P08121 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Gm25732-201ENSMUST00000175168 60 ntBASIC15.32■□□□□ 0.04
Col3a1P08121 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Rprl1-202ENSMUST00000198476 238 ntBASIC15.32■□□□□ 0.04
Col3a1P08121 Gm9678-201ENSMUST00000198979 1149 ntBASIC15.32■□□□□ 0.04
Col3a1P08121 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Col3a1P08121 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
Col3a1P08121 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC15.32■□□□□ 0.04
Col3a1P08121 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col3a1P08121 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms