Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 AC137842.1-201ENSMUST00000227896 2064 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Snord83b-201ENSMUST00000104546 94 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Gm13392-201ENSMUST00000117708 150 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Trav4d-2-201ENSMUST00000120914 335 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 AC022775.2-201ENSMUST00000227885 646 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.99□□□□□ -0.17
Cpsf3Q9QXK7 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gm22018-201ENSMUST00000104357 131 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gm22121-201ENSMUST00000175148 54 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gm6222-202ENSMUST00000182143 629 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gm32025-201ENSMUST00000217960 307 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 AC125350.2-201ENSMUST00000224737 727 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cpsf3Q9QXK7 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Gm43630-201ENSMUST00000201550 776 ntBASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cpsf3Q9QXK7 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cpsf3Q9QXK7 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cpsf3Q9QXK7 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms