Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Gm21362-201ENSMUST00000194272 928 ntBASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Gm17968-201ENSMUST00000194902 784 ntBASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trem1Q9JKE2 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm12882-201ENSMUST00000121696 517 ntBASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Mir5126-201ENSMUST00000175513 77 ntBASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 AC131690.1-201ENSMUST00000218406 374 ntBASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm43999-201ENSMUST00000204286 2889 ntBASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trem1Q9JKE2 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 AC129336.2-201ENSMUST00000218053 3086 ntBASIC11.61□□□□□ -0.55
Trem1Q9JKE2 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Gm13884-201ENSMUST00000118103 829 ntBASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Mir8098-201ENSMUST00000184011 137 ntBASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 AC131187.1-201ENSMUST00000224567 809 ntBASIC11.61□□□□□ -0.55
Trem1Q9JKE2 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trem1Q9JKE2 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms