Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Gm5781-201ENSMUST00000219792 443 ntBASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm12502-201ENSMUST00000120197 444 ntBASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm14381-201ENSMUST00000122105 414 ntBASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Gm38157-201ENSMUST00000194178 1698 ntBASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim54Q9ERP3 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Mir877-201ENSMUST00000104738 85 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm15236-201ENSMUST00000117309 379 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm24548-201ENSMUST00000158650 108 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm27320-201ENSMUST00000184892 109 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm32025-201ENSMUST00000217960 307 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim54Q9ERP3 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.07□□□□□ -0.16
Trim54Q9ERP3 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim54Q9ERP3 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim54Q9ERP3 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim54Q9ERP3 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim54Q9ERP3 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim54Q9ERP3 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim54Q9ERP3 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms