Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm15321-201ENSMUST00000121290 288 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm27772-201ENSMUST00000184900 187 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.86□□□□□ -0.35
Lima1Q9ERG0 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Lima1Q9ERG0 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 AC123834.1-201ENSMUST00000225346 2043 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Syt7-204ENSMUST00000223586 1344 ntBASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lima1Q9ERG0 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lima1Q9ERG0 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lima1Q9ERG0 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lima1Q9ERG0 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lima1Q9ERG0 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lima1Q9ERG0 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms