Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Mir686-201ENSMUST00000102174 109 ntBASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm15806-201ENSMUST00000120696 955 ntBASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm27892-201ENSMUST00000185017 106 ntBASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm28693-202ENSMUST00000190758 331 ntBASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm38049-201ENSMUST00000195698 1372 ntBASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ddx56Q9D0R4 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Gm11803-201ENSMUST00000119966 444 ntBASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ddx56Q9D0R4 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ddx56Q9D0R4 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms