Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm14719-201ENSMUST00000121891 340 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm7063-201ENSMUST00000186840 981 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm29667-201ENSMUST00000190817 490 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 AC125206.2-201ENSMUST00000217454 574 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ddx28Q9CWT6 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gm24694-201ENSMUST00000180054 110 ntBASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gm27663-201ENSMUST00000184839 110 ntBASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gm17795-201ENSMUST00000214505 757 ntBASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Map1b-203ENSMUST00000223725 2669 ntBASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ddx28Q9CWT6 Gm37015-201ENSMUST00000192763 1521 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Gm15770-201ENSMUST00000117498 584 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.21□□□□□ -0.45
Ddx28Q9CWT6 CT025535.1-201ENSMUST00000227172 491 ntBASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms