Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm4986-201ENSMUST00000119731 549 ntBASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Gm24548-201ENSMUST00000158650 108 ntBASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Gm13297-201ENSMUST00000120205 934 ntBASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Gm2991-201ENSMUST00000173338 480 ntBASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 AC132384.14-201ENSMUST00000219346 1147 ntBASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Sf3b1Q99NB9 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Sf3b1Q99NB9 Gm3756-201ENSMUST00000169182 1355 ntBASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sf3b1Q99NB9 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms