Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm27486-201ENSMUST00000184923 80 ntBASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.29□□□□□ -0.44
Clrn1Q8K445 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.29□□□□□ -0.44
Clrn1Q8K445 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.29□□□□□ -0.44
Clrn1Q8K445 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Clrn1Q8K445 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.28□□□□□ -0.44
Clrn1Q8K445 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Proscos-202ENSMUST00000178990 666 ntBASIC12.28□□□□□ -0.44
Clrn1Q8K445 Gm27839-201ENSMUST00000184242 106 ntBASIC12.28□□□□□ -0.44
Clrn1Q8K445 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.28□□□□□ -0.44
Clrn1Q8K445 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.28□□□□□ -0.44
Clrn1Q8K445 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Clrn1Q8K445 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms