Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Gm9061-201ENSMUST00000182707 1006 ntBASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Gm29127-201ENSMUST00000188304 517 ntBASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Brf1Q8CFK2 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Brf1Q8CFK2 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Brf1Q8CFK2 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
Brf1Q8CFK2 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Brf1Q8CFK2 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Gm37748-201ENSMUST00000194379 1140 ntBASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 AC122459.1-201ENSMUST00000228373 885 ntBASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Brf1Q8CFK2 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Gm5896-201ENSMUST00000189662 1024 ntBASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Gm6266-201ENSMUST00000203844 806 ntBASIC15.69■□□□□ 0.1
Brf1Q8CFK2 AC166051.1-201ENSMUST00000214313 210 ntBASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC15.69■□□□□ 0.1
Brf1Q8CFK2 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 CT009713.10-201ENSMUST00000225013 1986 ntBASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Brf1Q8CFK2 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Brf1Q8CFK2 Gm16177-201ENSMUST00000120728 718 ntBASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms