Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Ccl11-201ENSMUST00000000342 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim47Q8C0E3 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.43□□□□□ -0.1
Trim47Q8C0E3 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 G530012D18Rik-201ENSMUST00000178024 420 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Gm38002-201ENSMUST00000193255 180 ntBASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Gm32025-201ENSMUST00000217960 307 ntBASIC14.43□□□□□ -0.1
Trim47Q8C0E3 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim47Q8C0E3 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm8793-201ENSMUST00000183069 1303 ntBASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm7809-201ENSMUST00000153199 742 ntBASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Gm8798-201ENSMUST00000211877 1661 ntBASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Trim47Q8C0E3 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim47Q8C0E3 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 87.8 ms