Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Scaf4Q6PFF0 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Gm22175-201ENSMUST00000175007 78 ntBASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 AC124732.2-201ENSMUST00000221977 316 ntBASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Scaf4Q6PFF0 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Scaf4Q6PFF0 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Scaf4Q6PFF0 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Scaf4Q6PFF0 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Gm19078-201ENSMUST00000206311 727 ntBASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scaf4Q6PFF0 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms