Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Gm24845-201ENSMUST00000158034 109 ntBASIC16.79■□□□□ 0.28
Trim28Q62318 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Gm37201-201ENSMUST00000191845 523 ntBASIC16.79■□□□□ 0.28
Trim28Q62318 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Gm13097-201ENSMUST00000210722 397 ntBASIC16.79■□□□□ 0.28
Trim28Q62318 Gm39404-201ENSMUST00000216350 313 ntBASIC16.79■□□□□ 0.28
Trim28Q62318 Gm18615-201ENSMUST00000222919 1031 ntBASIC16.79■□□□□ 0.28
Trim28Q62318 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC16.79■□□□□ 0.28
Trim28Q62318 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim28Q62318 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim28Q62318 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim28Q62318 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim28Q62318 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC16.78■□□□□ 0.28
Trim28Q62318 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim28Q62318 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Trim28Q62318 AC154305.4-201ENSMUST00000224520 614 ntBASIC16.78■□□□□ 0.28
Trim28Q62318 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
Trim28Q62318 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC16.78■□□□□ 0.28
Trim28Q62318 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC16.78■□□□□ 0.28
Trim28Q62318 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim28Q62318 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim28Q62318 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim28Q62318 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Gm38346-201ENSMUST00000192379 2639 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Gm2606-201ENSMUST00000100754 1002 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Gm12314-201ENSMUST00000118104 538 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Gm12012-201ENSMUST00000118857 1066 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Gm12715-201ENSMUST00000121430 1128 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC16.77■□□□□ 0.28
Trim28Q62318 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC16.77■□□□□ 0.28
Trim28Q62318 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC16.77■□□□□ 0.28
Trim28Q62318 Gm7293-201ENSMUST00000216682 1007 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 AC159747.1-201ENSMUST00000219903 265 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim28Q62318 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC16.77■□□□□ 0.28
Trim28Q62318 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Trim28Q62318 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim28Q62318 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Trim28Q62318 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim28Q62318 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim28Q62318 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Trim28Q62318 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Trim28Q62318 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC16.77■□□□□ 0.27
Trim28Q62318 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Trim28Q62318 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Trim28Q62318 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim28Q62318 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim28Q62318 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms