Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.56■□□□□ 0.08
Rfx1P48377 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC15.56■□□□□ 0.08
Rfx1P48377 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC15.56■□□□□ 0.08
Rfx1P48377 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rfx1P48377 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC15.55■□□□□ 0.08
Rfx1P48377 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
Rfx1P48377 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
Rfx1P48377 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Rfx1P48377 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC15.55■□□□□ 0.08
Rfx1P48377 Gm12485-201ENSMUST00000119641 291 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.55■□□□□ 0.08
Rfx1P48377 Gm43094-201ENSMUST00000196549 921 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 AC159114.1-201ENSMUST00000220349 266 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 AC124732.2-201ENSMUST00000221977 316 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 Gm9063-201ENSMUST00000223299 582 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Rfx1P48377 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Adra1a-206ENSMUST00000225182 2337 ntBASIC15.55■□□□□ 0.08
Rfx1P48377 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
Rfx1P48377 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rfx1P48377 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Rfx1P48377 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC15.54■□□□□ 0.08
Rfx1P48377 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.54■□□□□ 0.08
Rfx1P48377 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.54■□□□□ 0.08
Rfx1P48377 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Gm7049-201ENSMUST00000223520 1712 ntBASIC15.54■□□□□ 0.08
Rfx1P48377 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC15.54■□□□□ 0.08
Rfx1P48377 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rfx1P48377 Gm45266-201ENSMUST00000210111 2173 ntBASIC15.53■□□□□ 0.08
Rfx1P48377 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Rfx1P48377 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC15.53■□□□□ 0.08
Rfx1P48377 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC15.53■□□□□ 0.08
Rfx1P48377 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Rfx1P48377 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.53■□□□□ 0.08
Rfx1P48377 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Gm8617-201ENSMUST00000118796 2222 ntBASIC15.53■□□□□ 0.08
Rfx1P48377 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Rfx1P48377 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Rfx1P48377 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms