Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RaraP11416 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
RaraP11416 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RaraP11416 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RaraP11416 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RaraP11416 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.08□□□□□ -0.16
RaraP11416 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC14.08□□□□□ -0.16
RaraP11416 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.08□□□□□ -0.16
RaraP11416 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
RaraP11416 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC14.08□□□□□ -0.16
RaraP11416 Gm28631-201ENSMUST00000190740 334 ntBASIC14.08□□□□□ -0.16
RaraP11416 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.08□□□□□ -0.16
RaraP11416 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.08□□□□□ -0.16
RaraP11416 Gm6983-201ENSMUST00000214912 628 ntBASIC14.08□□□□□ -0.16
RaraP11416 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.08□□□□□ -0.16
RaraP11416 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RaraP11416 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
RaraP11416 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RaraP11416 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.07□□□□□ -0.16
RaraP11416 Gm15371-201ENSMUST00000117057 784 ntBASIC14.07□□□□□ -0.16
RaraP11416 Gm6473-201ENSMUST00000188572 1210 ntBASIC14.07□□□□□ -0.16
RaraP11416 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC14.07□□□□□ -0.16
RaraP11416 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC14.07□□□□□ -0.16
RaraP11416 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.07□□□□□ -0.16
RaraP11416 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.07□□□□□ -0.16
RaraP11416 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RaraP11416 Gm42840-201ENSMUST00000200303 2251 ntBASIC14.07□□□□□ -0.16
RaraP11416 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Gm44094-201ENSMUST00000204703 2030 ntBASIC14.07□□□□□ -0.16
RaraP11416 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RaraP11416 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.06□□□□□ -0.16
RaraP11416 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC14.06□□□□□ -0.16
RaraP11416 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Gm5687-201ENSMUST00000118252 640 ntBASIC14.06□□□□□ -0.16
RaraP11416 Gm14057-201ENSMUST00000120631 482 ntBASIC14.06□□□□□ -0.16
RaraP11416 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC14.06□□□□□ -0.16
RaraP11416 Mir7654-201ENSMUST00000185082 70 ntBASIC14.06□□□□□ -0.16
RaraP11416 Gm44397-201ENSMUST00000195950 113 ntBASIC14.06□□□□□ -0.16
RaraP11416 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.06□□□□□ -0.16
RaraP11416 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.06□□□□□ -0.16
RaraP11416 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.06□□□□□ -0.16
RaraP11416 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RaraP11416 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms