Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Gm15770-201ENSMUST00000117498 584 ntBASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Gm20445-201ENSMUST00000061905 565 ntBASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm24694-201ENSMUST00000180054 110 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm27663-201ENSMUST00000184839 110 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm17795-201ENSMUST00000214505 757 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 AC154621.1-201ENSMUST00000226155 1119 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Adra1a-206ENSMUST00000225182 2337 ntBASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Lima1Q9ERG0 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Gm20949-201ENSMUST00000206478 952 ntBASIC12.87□□□□□ -0.35
Lima1Q9ERG0 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Lima1Q9ERG0 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms