Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm8213-201ENSMUST00000118191 441 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm12490-201ENSMUST00000120255 560 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm6244-201ENSMUST00000178732 841 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Proscos-202ENSMUST00000178990 666 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm9124-201ENSMUST00000191789 1092 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm9113-201ENSMUST00000192510 1018 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm9131-201ENSMUST00000193557 1089 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm9121-201ENSMUST00000193749 1071 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm45059-201ENSMUST00000205558 1077 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 AC110817.1-201ENSMUST00000225706 605 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm5356-201ENSMUST00000093326 615 ntBASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ddx56Q9D0R4 AC101945.2-201ENSMUST00000227886 1377 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm11618-201ENSMUST00000117946 267 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm10156-201ENSMUST00000122364 462 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Mir1894-201ENSMUST00000122802 81 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm9002-201ENSMUST00000178437 499 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Gm17794-201ENSMUST00000220252 955 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 AC138604.1-201ENSMUST00000226969 739 ntBASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ddx56Q9D0R4 AC154747.3-201ENSMUST00000224471 3470 ntBASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Gm9816-201ENSMUST00000122292 1414 ntBASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ddx56Q9D0R4 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ddx56Q9D0R4 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms