Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Brf1Q8CFK2 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Brf1Q8CFK2 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm12390-201ENSMUST00000117897 397 ntBASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm29649-201ENSMUST00000185649 419 ntBASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Brf1Q8CFK2 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Gm16479-201ENSMUST00000121706 932 ntBASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Gm2824-203ENSMUST00000226189 1228 ntBASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Brf1Q8CFK2 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Gm4984-201ENSMUST00000115987 360 ntBASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Gm4271-201ENSMUST00000174444 973 ntBASIC15.72■□□□□ 0.11
Brf1Q8CFK2 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Brf1Q8CFK2 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Brf1Q8CFK2 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.71■□□□□ 0.11
Brf1Q8CFK2 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms