Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Gm5187-201ENSMUST00000117317 991 ntBASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Dctn4-202ENSMUST00000223590 1530 ntBASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm5940-201ENSMUST00000117582 1068 ntBASIC15.19■□□□□ 0.02
Vps53Q8CCB4 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm7399-201ENSMUST00000032395 858 ntBASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm38094-201ENSMUST00000195864 2978 ntBASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC15.19■□□□□ 0.02
Vps53Q8CCB4 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm45003-201ENSMUST00000205875 2158 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm13886-201ENSMUST00000117876 1183 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm8801-201ENSMUST00000173255 1064 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm9124-201ENSMUST00000191789 1092 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm9113-201ENSMUST00000192510 1018 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm9131-201ENSMUST00000193557 1089 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm9121-201ENSMUST00000193749 1071 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms