Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm15370-201ENSMUST00000117158 253 ntBASIC18.33■□□□□ 0.53
Usp47Q8BY87 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp47Q8BY87 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC18.33■□□□□ 0.53
Usp47Q8BY87 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm10608-202ENSMUST00000213924 676 ntBASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm18041-201ENSMUST00000218210 618 ntBASIC18.33■□□□□ 0.53
Usp47Q8BY87 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm44443-201ENSMUST00000204396 5633 ntBASIC18.33■□□□□ 0.53
Usp47Q8BY87 Gm8617-201ENSMUST00000118796 2222 ntBASIC18.33■□□□□ 0.53
Usp47Q8BY87 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usp47Q8BY87 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp47Q8BY87 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Gm2991-201ENSMUST00000173338 480 ntBASIC18.32■□□□□ 0.52
Usp47Q8BY87 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Gm9368-201ENSMUST00000219348 831 ntBASIC18.32■□□□□ 0.52
Usp47Q8BY87 Morn2-202ENSMUST00000227729 656 ntBASIC18.32■□□□□ 0.52
Usp47Q8BY87 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Gm22058-201ENSMUST00000083393 310 ntBASIC18.32■□□□□ 0.52
Usp47Q8BY87 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp47Q8BY87 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gm12241-201ENSMUST00000118330 726 ntBASIC18.31■□□□□ 0.52
Usp47Q8BY87 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gm13342-201ENSMUST00000121055 207 ntBASIC18.31■□□□□ 0.52
Usp47Q8BY87 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gm5637-201ENSMUST00000153890 1119 ntBASIC18.31■□□□□ 0.52
Usp47Q8BY87 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gm24526-201ENSMUST00000082921 158 ntBASIC18.31■□□□□ 0.52
Usp47Q8BY87 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Usp47Q8BY87 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm13875-201ENSMUST00000120162 282 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm7584-201ENSMUST00000175829 940 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm38266-201ENSMUST00000194931 421 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm43822-201ENSMUST00000200285 476 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm45865-201ENSMUST00000211815 945 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms