Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ubfd1Q78JW9 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Gm43134-201ENSMUST00000199434 1886 ntBASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Gm13786-201ENSMUST00000122371 333 ntBASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Gm24548-201ENSMUST00000158650 108 ntBASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Gm32025-201ENSMUST00000217960 307 ntBASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 AC069562.3-201ENSMUST00000225387 587 ntBASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ubfd1Q78JW9 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm9368-201ENSMUST00000219348 831 ntBASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gm45930-201ENSMUST00000221330 292 ntBASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Ubfd1Q78JW9 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms