Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gm15653-201ENSMUST00000119247 907 ntBASIC12.7□□□□□ -0.38
Col28a1Q2UY11 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.7□□□□□ -0.38
Col28a1Q2UY11 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gm18018-201ENSMUST00000198273 408 ntBASIC12.7□□□□□ -0.38
Col28a1Q2UY11 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Gm22189-201ENSMUST00000103822 86 ntBASIC12.69□□□□□ -0.38
Col28a1Q2UY11 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Gm3436-201ENSMUST00000179930 840 ntBASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Gm4804-201ENSMUST00000182234 999 ntBASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.69□□□□□ -0.38
Col28a1Q2UY11 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm9522-201ENSMUST00000182394 926 ntBASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms