Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm8738-201ENSMUST00000172606 329 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm21769-201ENSMUST00000211922 111 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Mir433-201ENSMUST00000093564 124 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm37133-201ENSMUST00000192705 1922 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm7993-201ENSMUST00000200970 1384 ntBASIC11.27□□□□□ -0.61
Nkx3-1P97436 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gm11978-201ENSMUST00000122315 466 ntBASIC11.26□□□□□ -0.61
Nkx3-1P97436 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gm12626-201ENSMUST00000117339 1983 ntBASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gm12623-201ENSMUST00000119849 1983 ntBASIC11.26□□□□□ -0.61
Nkx3-1P97436 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC11.26□□□□□ -0.61
Nkx3-1P97436 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Gm10434-201ENSMUST00000101158 471 ntBASIC11.25□□□□□ -0.61
Nkx3-1P97436 Gm12502-201ENSMUST00000120197 444 ntBASIC11.25□□□□□ -0.61
Nkx3-1P97436 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms