Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.53□□□□□ -0.4
Sox3P53784 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Sox3P53784 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Sox3P53784 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.53□□□□□ -0.4
Sox3P53784 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sox3P53784 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sox3P53784 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sox3P53784 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sox3P53784 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox3P53784 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.53□□□□□ -0.4
Sox3P53784 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sox3P53784 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.53□□□□□ -0.4
Sox3P53784 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox3P53784 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC12.52□□□□□ -0.4
Sox3P53784 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Sox3P53784 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Sox3P53784 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
Sox3P53784 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox3P53784 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC12.52□□□□□ -0.41
Sox3P53784 Gm4271-201ENSMUST00000174444 973 ntBASIC12.52□□□□□ -0.41
Sox3P53784 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.52□□□□□ -0.41
Sox3P53784 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sox3P53784 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Sox3P53784 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
Sox3P53784 Gm37986-201ENSMUST00000193285 383 ntBASIC12.52□□□□□ -0.41
Sox3P53784 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.52□□□□□ -0.41
Sox3P53784 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.52□□□□□ -0.41
Sox3P53784 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sox3P53784 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC12.52□□□□□ -0.41
Sox3P53784 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
Sox3P53784 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sox3P53784 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sox3P53784 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.52□□□□□ -0.41
Sox3P53784 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox3P53784 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.51□□□□□ -0.41
Sox3P53784 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC12.51□□□□□ -0.41
Sox3P53784 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.51□□□□□ -0.41
Sox3P53784 Rps4l-202ENSMUST00000204242 789 ntBASIC12.51□□□□□ -0.41
Sox3P53784 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.51□□□□□ -0.41
Sox3P53784 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.51□□□□□ -0.41
Sox3P53784 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sox3P53784 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sox3P53784 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms