Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 AC159649.2-201ENSMUST00000222984 3223 ntBASIC13.48□□□□□ -0.25
HttP42859 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HttP42859 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
HttP42859 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC13.48□□□□□ -0.25
HttP42859 Gm11949-201ENSMUST00000117640 372 ntBASIC13.48□□□□□ -0.25
HttP42859 Gm8737-201ENSMUST00000122208 642 ntBASIC13.48□□□□□ -0.25
HttP42859 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC13.48□□□□□ -0.25
HttP42859 Gm17877-201ENSMUST00000192578 814 ntBASIC13.48□□□□□ -0.25
HttP42859 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Gm26448-201ENSMUST00000082446 203 ntBASIC13.48□□□□□ -0.25
HttP42859 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HttP42859 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HttP42859 Gm45909-201ENSMUST00000212413 1031 ntBASIC13.48□□□□□ -0.25
HttP42859 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC13.48□□□□□ -0.25
HttP42859 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HttP42859 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HttP42859 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Gm5555-201ENSMUST00000120352 1111 ntBASIC13.47□□□□□ -0.25
HttP42859 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HttP42859 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Gm24844-201ENSMUST00000158679 127 ntBASIC13.47□□□□□ -0.25
HttP42859 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.47□□□□□ -0.25
HttP42859 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HttP42859 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.47□□□□□ -0.25
HttP42859 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HttP42859 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
HttP42859 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Mir6407-201ENSMUST00000184510 101 ntBASIC13.47□□□□□ -0.25
HttP42859 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Gm4604-201ENSMUST00000025040 390 ntBASIC13.47□□□□□ -0.25
HttP42859 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.47□□□□□ -0.25
HttP42859 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HttP42859 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.47□□□□□ -0.25
HttP42859 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
HttP42859 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC13.46□□□□□ -0.25
HttP42859 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC13.46□□□□□ -0.25
HttP42859 Gm9507-202ENSMUST00000180157 654 ntBASIC13.46□□□□□ -0.25
HttP42859 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13.46□□□□□ -0.25
HttP42859 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.46□□□□□ -0.25
HttP42859 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC13.46□□□□□ -0.25
HttP42859 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HttP42859 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HttP42859 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HttP42859 Gm6903-201ENSMUST00000160509 1366 ntBASIC13.46□□□□□ -0.26
HttP42859 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HttP42859 Gm14921-201ENSMUST00000118643 908 ntBASIC13.46□□□□□ -0.26
HttP42859 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HttP42859 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HttP42859 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HttP42859 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC13.46□□□□□ -0.26
HttP42859 Gm5298-201ENSMUST00000201122 892 ntBASIC13.46□□□□□ -0.26
HttP42859 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC13.45□□□□□ -0.26
HttP42859 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC13.45□□□□□ -0.26
HttP42859 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HttP42859 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms