Protein–RNA interactions for Protein: P37913

Lig1, DNA ligase 1, mousemouse

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig1P37913 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Lig1P37913 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Lig1P37913 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig1P37913 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Lig1P37913 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig1P37913 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig1P37913 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig1P37913 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig1P37913 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Lig1P37913 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Lig1P37913 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Lig1P37913 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Lig1P37913 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC14.83□□□□□ -0.04
Lig1P37913 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
Lig1P37913 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.83□□□□□ -0.04
Lig1P37913 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Lig1P37913 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.83□□□□□ -0.04
Lig1P37913 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC14.83□□□□□ -0.04
Lig1P37913 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.83□□□□□ -0.04
Lig1P37913 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Lig1P37913 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC14.83□□□□□ -0.04
Lig1P37913 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Lig1P37913 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.83□□□□□ -0.04
Lig1P37913 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.83□□□□□ -0.04
Lig1P37913 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig1P37913 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.82□□□□□ -0.04
Lig1P37913 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Lig1P37913 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Lig1P37913 Gm14726-201ENSMUST00000120623 896 ntBASIC14.82□□□□□ -0.04
Lig1P37913 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Gm8738-201ENSMUST00000172606 329 ntBASIC14.82□□□□□ -0.04
Lig1P37913 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Lig1P37913 Gm37466-201ENSMUST00000195692 652 ntBASIC14.82□□□□□ -0.04
Lig1P37913 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.82□□□□□ -0.04
Lig1P37913 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Lig1P37913 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Lig1P37913 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Lig1P37913 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig1P37913 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.81□□□□□ -0.04
Lig1P37913 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Lig1P37913 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC14.81□□□□□ -0.04
Lig1P37913 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.81□□□□□ -0.04
Lig1P37913 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.81□□□□□ -0.04
Lig1P37913 Gm38297-201ENSMUST00000195122 1057 ntBASIC14.81□□□□□ -0.04
Lig1P37913 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.81□□□□□ -0.04
Lig1P37913 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lig1P37913 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms