Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 AC131997.1-201ENSMUST00000228611 1229 ntBASIC10.78□□□□□ -0.68
Hmgb3O54879 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Gm45643-201ENSMUST00000211364 1484 ntBASIC10.78□□□□□ -0.68
Hmgb3O54879 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Ncor2-201ENSMUST00000055256 7780 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Helz-202ENSMUST00000100305 5953 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC10.77□□□□□ -0.68
Hmgb3O54879 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
Hmgb3O54879 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC10.77□□□□□ -0.68
Hmgb3O54879 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.68
Hmgb3O54879 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC10.77□□□□□ -0.68
Hmgb3O54879 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC10.77□□□□□ -0.68
Hmgb3O54879 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Hmgb3O54879 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 CT025624.1-201ENSMUST00000224007 2700 ntBASIC10.77□□□□□ -0.69
Hmgb3O54879 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Gm6916-202ENSMUST00000205523 195 ntBASIC10.77□□□□□ -0.69
Hmgb3O54879 Gm4971-201ENSMUST00000205991 1108 ntBASIC10.77□□□□□ -0.69
Hmgb3O54879 Gm18057-201ENSMUST00000208220 503 ntBASIC10.77□□□□□ -0.69
Hmgb3O54879 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 AC166997.1-201ENSMUST00000225122 572 ntBASIC10.77□□□□□ -0.69
Hmgb3O54879 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Gm6018-201ENSMUST00000216090 1306 ntBASIC10.77□□□□□ -0.69
Hmgb3O54879 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Stard13-201ENSMUST00000062015 5526 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC10.77□□□□□ -0.69
Hmgb3O54879 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Hmgb3O54879 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Mbnl2-204ENSMUST00000227012 2390 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Elf4-201ENSMUST00000033429 5847 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 173 ms