Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Prpf40aQ9R1C7 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mir874-201ENSMUST00000104769 76 ntBASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Gm15806-201ENSMUST00000120696 955 ntBASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Gm25116-201ENSMUST00000157191 122 ntBASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 CT030657.3-201ENSMUST00000222707 1200 ntBASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Prpf40aQ9R1C7 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
Prpf40aQ9R1C7 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Prpf40aQ9R1C7 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gm17794-201ENSMUST00000220252 955 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 AC140375.2-201ENSMUST00000225283 584 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Prpf40aQ9R1C7 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Gm12138-201ENSMUST00000122180 951 ntBASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Gm6152-201ENSMUST00000151704 340 ntBASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC14.38□□□□□ -0.11
Prpf40aQ9R1C7 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms