Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm14660-201ENSMUST00000119809 575 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm4271-201ENSMUST00000174444 973 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 AY702102-202ENSMUST00000194651 1173 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm37497-201ENSMUST00000195830 798 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 AC134254.1-201ENSMUST00000221362 167 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm2824-203ENSMUST00000226189 1228 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm45684-201ENSMUST00000210244 1571 ntBASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Vps28Q9D1C8 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.4□□□□□ -0.27
Vps28Q9D1C8 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.4□□□□□ -0.27
Vps28Q9D1C8 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm16177-201ENSMUST00000120728 718 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm45841-201ENSMUST00000207700 164 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms