Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Sh3rf1Q69ZI1 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Mir7654-201ENSMUST00000185082 70 ntBASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Gm5356-201ENSMUST00000093326 615 ntBASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sh3rf1Q69ZI1 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Gm11425-201ENSMUST00000119608 498 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Gm27892-201ENSMUST00000185017 106 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Gm5425-201ENSMUST00000214125 459 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Matn2-203ENSMUST00000226766 3252 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Gm9396-201ENSMUST00000076703 567 ntBASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sh3rf1Q69ZI1 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms