Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12616-201ENSMUST00000118594 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm14109-201ENSMUST00000118814 309 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12624-201ENSMUST00000177615 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12621-201ENSMUST00000177760 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12615-201ENSMUST00000177970 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12622-201ENSMUST00000177975 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12627-201ENSMUST00000178412 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12625-201ENSMUST00000179122 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12614-201ENSMUST00000179586 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12613-201ENSMUST00000180323 382 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm8798-201ENSMUST00000211877 1661 ntBASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm19221-201ENSMUST00000221827 1477 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm26956-201ENSMUST00000182176 986 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm3508-201ENSMUST00000186012 792 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm45770-201ENSMUST00000212105 616 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 CT025533.2-201ENSMUST00000228715 1248 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Crry-ps-201ENSMUST00000079090 1309 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Acot6-202ENSMUST00000222921 3622 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm12208-201ENSMUST00000122004 163 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm8194-201ENSMUST00000159783 859 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm23363-201ENSMUST00000175024 79 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 AA914427-201ENSMUST00000193194 1166 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm44126-201ENSMUST00000204831 514 ntBASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm9025-201ENSMUST00000122415 1575 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 AC113060.1-201ENSMUST00000225689 1573 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm10782-202ENSMUST00000223775 1480 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm18734-201ENSMUST00000172937 808 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm28450-201ENSMUST00000187349 638 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Gm37835-201ENSMUST00000193305 361 ntBASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ccdc88aQ5SNZ0 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms