Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm24990-201ENSMUST00000157406 323 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm38092-201ENSMUST00000195600 653 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm44967-201ENSMUST00000207047 631 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm21451-201ENSMUST00000111062 2775 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm11930-201ENSMUST00000117788 190 ntBASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm13492-201ENSMUST00000119772 665 ntBASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm15276-201ENSMUST00000145953 498 ntBASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 AA914427-201ENSMUST00000193194 1166 ntBASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3aQ3ULJ3 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.71□□□□□ -0.22
Upf3aQ3ULJ3 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Upf3aQ3ULJ3 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Upf3aQ3ULJ3 Daam2-202ENSMUST00000224595 1926 ntBASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gm13875-201ENSMUST00000120162 282 ntBASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gm2260-201ENSMUST00000184965 657 ntBASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms