Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm29664-201ENSMUST00000191125 463 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 9530003J23Rik-201ENSMUST00000020392 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm1821-202ENSMUST00000227415 750 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Efs-202ENSMUST00000227037 2540 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm42995-201ENSMUST00000197047 1330 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm6741-201ENSMUST00000057074 1330 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm14833-201ENSMUST00000118345 1027 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm11979-201ENSMUST00000119629 743 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm13740-201ENSMUST00000120590 310 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm25843-201ENSMUST00000122582 314 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm17063-201ENSMUST00000168135 456 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC12.94□□□□□ -0.34
Col9a1Q05722 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.94□□□□□ -0.34
Col9a1Q05722 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Olfr752-ps1-201ENSMUST00000208736 1141 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.94□□□□□ -0.34
Col9a1Q05722 RMST_1.1-211ENSMUST00000219726 783 ntTSL 3 BASIC12.94□□□□□ -0.34
Col9a1Q05722 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 AC124687.5-201ENSMUST00000222734 596 ntTSL 5 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Trappc3l-201ENSMUST00000095758 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col9a1Q05722 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.94□□□□□ -0.34
Col9a1Q05722 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Camk2g-217ENSMUST00000226630 1937 ntBASIC12.94□□□□□ -0.34
Col9a1Q05722 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col9a1Q05722 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.93□□□□□ -0.34
Col9a1Q05722 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col9a1Q05722 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.93□□□□□ -0.34
Col9a1Q05722 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm23251-201ENSMUST00000103773 110 ntBASIC12.93□□□□□ -0.34
Col9a1Q05722 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm11858-201ENSMUST00000117935 838 ntBASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm6461-201ENSMUST00000120015 633 ntBASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm12899-201ENSMUST00000120565 551 ntBASIC12.93□□□□□ -0.34
Col9a1Q05722 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm12227-201ENSMUST00000147847 563 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Gm26671-201ENSMUST00000180423 1157 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col9a1Q05722 Mir7076-201ENSMUST00000183519 74 ntBASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms