Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm14277-201ENSMUST00000121195 360 ntBASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm16479-201ENSMUST00000121706 932 ntBASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm18584-201ENSMUST00000203098 964 ntBASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm19163-201ENSMUST00000223313 780 ntBASIC14.44□□□□□ -0.1
Col6a1Q04857 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 Grk6-205ENSMUST00000224653 2976 ntBASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.44□□□□□ -0.1
Col6a1Q04857 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Col6a1Q04857 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.44□□□□□ -0.1
Col6a1Q04857 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col6a1Q04857 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
Col6a1Q04857 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Col6a1Q04857 Gm12363-201ENSMUST00000122250 668 ntBASIC14.43□□□□□ -0.1
Col6a1Q04857 Gm38317-201ENSMUST00000195564 343 ntBASIC14.43□□□□□ -0.1
Col6a1Q04857 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC14.43□□□□□ -0.1
Col6a1Q04857 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Col6a1Q04857 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.43□□□□□ -0.1
Col6a1Q04857 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Col6a1Q04857 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.43□□□□□ -0.1
Col6a1Q04857 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col6a1Q04857 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm10434-201ENSMUST00000101158 471 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm13316-201ENSMUST00000140537 691 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Mir6927-201ENSMUST00000184494 71 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm31256-201ENSMUST00000194705 506 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm43830-201ENSMUST00000198760 1067 ntBASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms