Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Col8a1Q00780 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col8a1Q00780 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm23270-201ENSMUST00000104055 131 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
Col8a1Q00780 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm8738-201ENSMUST00000172606 329 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm3508-201ENSMUST00000186012 792 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm38317-201ENSMUST00000195564 343 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm18584-201ENSMUST00000203098 964 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm5781-201ENSMUST00000219792 443 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.17□□□□□ -0.62
Col8a1Q00780 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC11.17□□□□□ -0.62
Col8a1Q00780 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col8a1Q00780 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Gm26185-201ENSMUST00000157692 266 ntBASIC11.16□□□□□ -0.62
Col8a1Q00780 Gm27438-201ENSMUST00000183480 110 ntBASIC11.16□□□□□ -0.62
Col8a1Q00780 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Gm44262-201ENSMUST00000204969 372 ntBASIC11.16□□□□□ -0.62
Col8a1Q00780 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.16□□□□□ -0.62
Col8a1Q00780 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Gm10702-201ENSMUST00000098929 1268 ntBASIC11.16□□□□□ -0.62
Col8a1Q00780 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Col8a1Q00780 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC11.16□□□□□ -0.62
Col8a1Q00780 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col8a1Q00780 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col8a1Q00780 Zkscan14-203ENSMUST00000198959 2243 ntBASIC11.15□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms