Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Cdh11P55288 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC11.94□□□□□ -0.5
Cdh11P55288 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Cdh11P55288 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Cdh11P55288 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Cdh11P55288 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC11.94□□□□□ -0.5
Cdh11P55288 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdh11P55288 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Cdh11P55288 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Cdh11P55288 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC11.93□□□□□ -0.5
Cdh11P55288 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC11.93□□□□□ -0.5
Cdh11P55288 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Cdh11P55288 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Cdh11P55288 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdh11P55288 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Cdh11P55288 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 AC151895.1-201ENSMUST00000219025 1742 ntBASIC11.92□□□□□ -0.5
Cdh11P55288 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Gm44851-201ENSMUST00000205735 2309 ntBASIC11.92□□□□□ -0.5
Cdh11P55288 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Cdh11P55288 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Cdh11P55288 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC11.92□□□□□ -0.5
Cdh11P55288 Gm14127-201ENSMUST00000117906 678 ntBASIC11.92□□□□□ -0.5
Cdh11P55288 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Gm5279-201ENSMUST00000199575 745 ntBASIC11.92□□□□□ -0.5
Cdh11P55288 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 AC132467.2-202ENSMUST00000227726 559 ntBASIC11.92□□□□□ -0.5
Cdh11P55288 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Cdh11P55288 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Cdh11P55288 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Gm20633-201ENSMUST00000176742 2831 ntBASIC11.92□□□□□ -0.5
Cdh11P55288 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC11.92□□□□□ -0.5
Cdh11P55288 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Cdh11P55288 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdh11P55288 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Gm45743-201ENSMUST00000212701 2795 ntBASIC11.91□□□□□ -0.5
Cdh11P55288 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC11.91□□□□□ -0.5
Cdh11P55288 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Gm20554-201ENSMUST00000177421 2352 ntBASIC11.91□□□□□ -0.5
Cdh11P55288 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Cdh11P55288 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdh11P55288 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms