Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col2a1P28481 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.63□□□□□ -0.07
Col2a1P28481 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Gm6963-201ENSMUST00000147879 379 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Gm24990-201ENSMUST00000157406 323 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC14.63□□□□□ -0.07
Col2a1P28481 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 AC163667.3-201ENSMUST00000225774 222 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 AC122197.2-201ENSMUST00000219196 1635 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC14.63□□□□□ -0.07
Col2a1P28481 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col2a1P28481 Gm42937-201ENSMUST00000197360 752 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Gm45224-201ENSMUST00000208203 414 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Gm10312-201ENSMUST00000078515 489 ntBASIC14.63□□□□□ -0.07
Col2a1P28481 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.63□□□□□ -0.07
Col2a1P28481 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col2a1P28481 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Col2a1P28481 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm14028-201ENSMUST00000117434 479 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC14.62□□□□□ -0.07
Col2a1P28481 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm26361-201ENSMUST00000158868 186 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm9678-201ENSMUST00000198979 1149 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Rps4l-202ENSMUST00000204242 789 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Gm18212-201ENSMUST00000211678 889 ntBASIC14.62□□□□□ -0.07
Col2a1P28481 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC14.62□□□□□ -0.07
Col2a1P28481 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC14.62□□□□□ -0.07
Col2a1P28481 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col2a1P28481 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Col2a1P28481 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col2a1P28481 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms