Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Gm17150-201ENSMUST00000165577 381 ntBASIC12.47□□□□□ -0.41
Lire1P11260 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.47□□□□□ -0.41
Lire1P11260 Gm33320-201ENSMUST00000192232 530 ntBASIC12.47□□□□□ -0.41
Lire1P11260 Gm6266-201ENSMUST00000203844 806 ntBASIC12.47□□□□□ -0.41
Lire1P11260 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 AC102291.3-201ENSMUST00000226566 405 ntBASIC12.47□□□□□ -0.41
Lire1P11260 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 AC211878.3-201ENSMUST00000222629 2018 ntBASIC12.47□□□□□ -0.41
Lire1P11260 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Lire1P11260 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lire1P11260 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.46□□□□□ -0.41
Lire1P11260 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Lire1P11260 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Lire1P11260 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.46□□□□□ -0.41
Lire1P11260 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.46□□□□□ -0.41
Lire1P11260 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Lire1P11260 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.46□□□□□ -0.41
Lire1P11260 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12.46□□□□□ -0.41
Lire1P11260 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.46□□□□□ -0.41
Lire1P11260 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.41
Lire1P11260 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.46□□□□□ -0.41
Lire1P11260 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Lire1P11260 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Lire1P11260 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Lire1P11260 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Gm9899-201ENSMUST00000065519 555 ntBASIC12.46□□□□□ -0.41
Lire1P11260 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lire1P11260 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Hoxa1-201ENSMUST00000000964 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Lire1P11260 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Lire1P11260 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Lire1P11260 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lire1P11260 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Lire1P11260 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.45□□□□□ -0.42
Lire1P11260 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Gm27701-201ENSMUST00000184498 110 ntBASIC12.45□□□□□ -0.42
Lire1P11260 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Gm5425-201ENSMUST00000214125 459 ntBASIC12.45□□□□□ -0.42
Lire1P11260 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
Lire1P11260 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.45□□□□□ -0.42
Lire1P11260 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 AC124433.1-202ENSMUST00000224762 1535 ntBASIC12.45□□□□□ -0.42
Lire1P11260 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms