Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm10434-201ENSMUST00000101158 471 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm12502-201ENSMUST00000120197 444 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Mir339-201ENSMUST00000083659 96 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm6013-201ENSMUST00000212264 699 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm18935-201ENSMUST00000212692 664 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Gm42928-201ENSMUST00000197338 3339 ntBASIC12.78□□□□□ -0.36
Chd3B1AR17 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Chd3B1AR17 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Chd3B1AR17 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.77□□□□□ -0.36
Chd3B1AR17 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.77□□□□□ -0.36
Chd3B1AR17 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
Chd3B1AR17 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.77□□□□□ -0.36
Chd3B1AR17 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.77□□□□□ -0.36
Chd3B1AR17 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Gm5781-201ENSMUST00000219792 443 ntBASIC12.77□□□□□ -0.36
Chd3B1AR17 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.77□□□□□ -0.36
Chd3B1AR17 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC12.77□□□□□ -0.36
Chd3B1AR17 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.77□□□□□ -0.36
Chd3B1AR17 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.77□□□□□ -0.36
Chd3B1AR17 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Chd3B1AR17 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms