Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm45527-201ENSMUST00000211052 774 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 AC122350.1-201ENSMUST00000228135 533 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm23119-201ENSMUST00000158610 140 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm12407-201ENSMUST00000180219 324 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm35960-201ENSMUST00000202712 767 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 AC154361.2-201ENSMUST00000224747 943 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC17.36■□□□□ 0.37
Scn4aQ9ER60 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm3726-201ENSMUST00000203110 785 ntBASIC17.35■□□□□ 0.37
Scn4aQ9ER60 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 AC138716.2-201ENSMUST00000226670 1016 ntBASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm7719-201ENSMUST00000182374 975 ntBASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm42629-201ENSMUST00000199063 1102 ntBASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Gm18514-201ENSMUST00000218980 436 ntBASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn4aQ9ER60 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm13394-201ENSMUST00000121658 1000 ntBASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Mir7221-201ENSMUST00000184009 72 ntBASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm29499-201ENSMUST00000189151 486 ntBASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm28329-201ENSMUST00000191208 689 ntBASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm29171-201ENSMUST00000191397 486 ntBASIC17.34■□□□□ 0.37
Scn4aQ9ER60 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms