Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Gm13369-201ENSMUST00000119442 987 ntBASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Gm27731-201ENSMUST00000185192 107 ntBASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Gm40466-201ENSMUST00000212174 422 ntBASIC13.43□□□□□ -0.26
Vps28Q9D1C8 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Vps28Q9D1C8 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 AC154725.1-201ENSMUST00000224826 1961 ntBASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Gm43818-201ENSMUST00000200605 466 ntBASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Vps28Q9D1C8 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Vps28Q9D1C8 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 105 ms